httk.atomistic.sitesutils module
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httk.atomistic.sitesutils.
abstract_symbol
(count)[source]
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httk.atomistic.sitesutils.
anonymous_formula
(filled_counts)[source]
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httk.atomistic.sitesutils.
clean_coordgroups_and_assignments
(coordgroups, assignments)[source]
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httk.atomistic.sitesutils.
coordgroups_cartesian_to_reduced
(coordgroups, basis)[source]
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httk.atomistic.sitesutils.
coordgroups_reduced_to_cartesian
(cell, coordgroups)[source]
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httk.atomistic.sitesutils.
coordgroups_reduced_to_unitcell
(coordgroups, hall_symbol, eps=Fraction(1, 1000))[source]
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httk.atomistic.sitesutils.
coordgroups_to_coords
(coordgroups)[source]
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httk.atomistic.sitesutils.
coords_and_counts_to_coordgroups
(coords, counts)[source]
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httk.atomistic.sitesutils.
coords_and_occupancies_to_coordgroups_and_assignments
(coords, occupancies)[source]
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httk.atomistic.sitesutils.
coords_reduced_to_cartesian
(cell, coords)[source]
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httk.atomistic.sitesutils.
coords_to_coordgroups
(coords, counts)[source]
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httk.atomistic.sitesutils.
coordswap
(fromidx, toidx, cell, coordgroups)[source]
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httk.atomistic.sitesutils.
main
()[source]
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httk.atomistic.sitesutils.
normalized_formula_parts
(assignments, ratios, counts)[source]
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httk.atomistic.sitesutils.
pbc_to_nonperiodic_vecs
(pbc)[source]
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httk.atomistic.sitesutils.
periodicity_to_pbc
(periodicity)[source]
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httk.atomistic.sitesutils.
sites_tidy
(sites, backends=['platon'])[source]
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httk.atomistic.sitesutils.
sort_coordgroups
(coordgroups, individual_data)[source]
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httk.atomistic.sitesutils.
structure_reduced_coordgroups_to_representative
(coordgroups, cell, spacegroup, backends=['isotropy'])[source]